Hello FSL Kingdom, hopefully someone can help me out with two specific questions.
1) Regarding the naming and function of the command eddy_correct: If all the command does is register the diffusion images to the reference image (12-degree of freedom affine), can this be considered an eddy-current correction?
Granted it is important to align the diffusion images to a reference image before fitting a tensor, but how would one directly address the issue of correcting for eddy distortions independent of head motion? Does FSL have this capability?
2) As a secondary question, where can I find more detailed information about the FDT pipeline? The general information on the fsl webpage doesn't really provide enough information about the tools (e.g., how does the dtifit command calculate the FA/MD images).
PS: I'm sorry if these posts have already been covered... I searched the archives but didn't come up with a direct answer.
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