On 30/03/11 10:44, Andreas Förster wrote:
> in revision 3315, I also had to use the variable name
> COOT_REFMAC_LIB_DIR to read it the new dictionary, and I get the same
> "problem reading link angle mmCIFLoop" warning.
>
OK, I have tracked this down - it was due to the use of
_chem_link_angle.linkId instead of _chem_link_angle.link_id in
lists/mon_lib_list.cif. It affected the 'ACYSNN' and 'ALASNN' link
descriptions - I don't know what they are, so I suspect that Coot didn't
either.
So practically speaking, the warnings are harmless and I imagine that
Garib will make them go away in the next release.
If you are using nucleotides with the v3 dictionary you will probably
want to use this setting too:
(set-convert-to-v2-atom-names 0)
or pythonicly:
set_convert_to_v2_atom_names(0)
Paul.
|