It was a permissions problem with the tmp directory. I thought I changed it, but alas it was set to root.
Thanks for your help!
Jason
-----Bruno Matias <[log in to unmask]> wrote: -----
To: Jason C Porta <[log in to unmask]>
From: Bruno Matias <[log in to unmask]>
Date: 04/30/2011 07:21AM
Subject: Re: [ccp4bb] Error in LABIN
Jason, I think you shoud install ccp4 without root permitios and it
will work properly.
2011/4/29, Jason C Porta <[log in to unmask]>:
> Here is more information on my problem:
>
> I installed ccp4i in /usr/local as root using the automated install.sh
> script.
>
> I then sourced the ccp4.setup and ccp4-others.setup for the proper shell,
> making sure the environment variables were pointing in the right direction.
>
> Now, if I run ccp4i as a normal user, and try to input an mtz file into any
> of the programs I get:
>
> CCP4i encountered an error when trying to extract the data from
> /home/jcp/KAuCN/new_refine/sad.mtz
> You can view the output from the mtzdump program which may........and so on.
>
> file does not exist /tmp/jcp/sad.mtz
>
> Now I think the problem might have to do with permissions. When I run ccp4i
> as root, I do not get this problem.
>
> Any suggestions?
>
> Jason Porta
>
>
> -----CCP4 bulletin board <[log in to unmask]> wrote: -----
>
> To: [log in to unmask]
> From: Jason Porta <[log in to unmask]>
> Sent by: CCP4 bulletin board <[log in to unmask]>
> Date: 04/28/2011 07:09PM
> Subject: [ccp4bb] Error in LABIN
>
> I installed a fresh copy of FC14 at home and am having problems with my CCP4
> installation. When I try to input an mtz file into any CCP4i program, I get
> the following errors:
>
> Error in LABIN: label Unassigned not found in file!
> MOLREP(ccp4): Error in label assignments in LABIN
>
> MOLREP(ccp4): Error in label assignments in LABIN
>
> In a previous post, it was suggested that the the tcl/tk location may need
> to be changed in ccp4.setup, though I check this and it is pointing to the
> right directory.
>
> Any suggestions?
>
> Jason Porta
>
--
Enviado do meu celular
Professor Dr. Bruno Anderson Matias da Rocha
Universidade Federal do Ceará - UFC
Departamento de Bioquímica e Biologia Molecular - DBBM
Campus do Pici - Bloco 907 Lab.1075
60.455-970, Fortaleza-CE, Brasil
Caixa Postal 6043
tel/fax: +55 85 33669818
|