Yes, I forgot about escet. The more up to date wab address is
http://webapps.embl-hamburg.de/escet/
even though that page still lists Thomas' address in Italy
Tim
On Thu, Apr 14, 2011 at 10:05:47AM +0200, Gergely Katona wrote:
> ESCET is also very useful to reveal small, but significant
> differences. It also identifies conformationally invariant regions for
> superposition.
>
> http://schneider.group.ifom-ieo-campus.it/escet/index.html
>
> Gergely
>
> On Thu, Apr 14, 2011 at 9:34 AM, Tim Gruene <[log in to unmask]> wrote:
> > Hello Rex,
> >
> > most programs probably use similar algorithms for superpositions, so you can
> > pick your choice:
> > - O
> > - lsqman
> > - lsqkab
> > - coot
> > - ...
> > are all similarily comfortable to use in my opinion.
> >
> > Tim
> >
> > On Wed, Apr 13, 2011 at 09:18:27PM +0100, REX PALMER wrote:
> >> Dear All
> >> What is the best program to use for comparing two protein structures which are very similar both structurally and wrt aa sequence? ie to get the rms deviations both generally and in selected regions.
> >>
> >> Rex Palmer
> >> Birkbeck College
> >
> > --
> > --
> > Tim Gruene
> > Institut fuer anorganische Chemie
> > Tammannstr. 4
> > D-37077 Goettingen
> >
> > phone: +49 (0)551 39 22149
> >
> > GPG Key ID = A46BEE1A
> >
> >
> > -----BEGIN PGP SIGNATURE-----
> > Version: GnuPG v1.4.10 (GNU/Linux)
> >
> > iD8DBQFNpqOSUxlJ7aRr7hoRAuLIAJ0Tf�㤛聬틢谋擄ਏ�
> > x3TuOjPcJqLZgL1vnANuUV0=
> > =vQE1
> > -----END PGP SIGNATURE-----
> >
> >
>
>
>
> --
> Gergely Katona, PhD
> associate professor, docent
> Department of Chemistry, University of Gothenburg
> Box 462, 40530 Göteborg, Sweden
> Tel: +46-31-786-3959 / M: +46-70-716-7586 / Fax: +46-31-786-3910
> Web: http://www.csb.gu.se/katona, Email: [log in to unmask]
--
--
Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen
phone: +49 (0)551 39 22149
GPG Key ID = A46BEE1A
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