ESCET is also very useful to reveal small, but significant
differences. It also identifies conformationally invariant regions for
superposition.
http://schneider.group.ifom-ieo-campus.it/escet/index.html
Gergely
On Thu, Apr 14, 2011 at 9:34 AM, Tim Gruene <[log in to unmask]> wrote:
> Hello Rex,
>
> most programs probably use similar algorithms for superpositions, so you can
> pick your choice:
> - O
> - lsqman
> - lsqkab
> - coot
> - ...
> are all similarily comfortable to use in my opinion.
>
> Tim
>
> On Wed, Apr 13, 2011 at 09:18:27PM +0100, REX PALMER wrote:
>> Dear All
>> What is the best program to use for comparing two protein structures which are very similar both structurally and wrt aa sequence? ie to get the rms deviations both generally and in selected regions.
>>
>> Rex Palmer
>> Birkbeck College
>
> --
> --
> Tim Gruene
> Institut fuer anorganische Chemie
> Tammannstr. 4
> D-37077 Goettingen
>
> phone: +49 (0)551 39 22149
>
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--
Gergely Katona, PhD
associate professor, docent
Department of Chemistry, University of Gothenburg
Box 462, 40530 Göteborg, Sweden
Tel: +46-31-786-3959 / M: +46-70-716-7586 / Fax: +46-31-786-3910
Web: http://www.csb.gu.se/katona, Email: [log in to unmask]
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