Hello Rex,
most programs probably use similar algorithms for superpositions, so you can
pick your choice:
- O
- lsqman
- lsqkab
- coot
- ...
are all similarily comfortable to use in my opinion.
Tim
On Wed, Apr 13, 2011 at 09:18:27PM +0100, REX PALMER wrote:
> Dear All
> What is the best program to use for comparing two protein structures which are very similar both structurally and wrt aa sequence? ie to get the rms deviations both generally and in selected regions.
>
> Rex Palmer
> Birkbeck College
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Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen
phone: +49 (0)551 39 22149
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