Only bear in mind that superpose relies on the presence of secondary structure, so that your selections should always include at least 3 SSEs.
Eugene.
On 14 Apr 2011, at 15:45, goslar wrote:
> (Should have) found it!
> http://www.ccp4.ac.uk/html/pdbcur.html#atom_selection
> Did not fully RTM. My aplogies.
> W.
>
>
> ---------- Forwarded message ----------
> From: goslar <[log in to unmask]>
> Date: Thu, Apr 14, 2011 at 10:19 AM
> Subject: superpose atom selection
> To: [log in to unmask]
>
>
> Hello all,
> from the ccp4 manual:
> http://www.ccp4.ac.uk/html/superpose.html
> <snip>
> superpose foo_1st.pdb [-s CID1] foo_2nd.pdb [-s CID2] [ foo_out.pdb ]
>
> where [-s CID1/2] are optional selection strings in MMDB convention,
> and [foo_out.pdb] is optional output file.
> </snip>
> Please, could someone point me to documentation of said MMDB convention.
> Many thanks in advance,
> Wolfram Tempel
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