Gwenaelle,
I looked at the files template_GM* with fslview and only
template_GM_init.nii has image but others are empty.
I used the same scripts with other subjects groups and I got all
template_GM* with images.
I have no idea why it does not have images.
YUMI
> Hi Yumi,
>
> hmmm, this doesn't say much.... What is the result of an ls in your struc
> directory?
>
> Cheers,
> Gwenaelle
>
>
>> De: YUMI MAEDA <[log in to unmask]>
>> Objet: Re: [FSL] Re : [FSL] fslvbm_2_template error file
>> À: [log in to unmask]
>> Date: Lundi 14 mars 2011, 20h04
>> Gwenaelle,
>>
>> thank you very much for reply.
>>
>> fslvbm2a.e*.1-4 was empty. but fslvbm2a is like this,
>>
>> /usr/pubsw/packages/fsl/current/bin/fast -R 0.3 -H 0.1
>> H_20090707ML_T1_struc_brain ;
>>
>> /usr/pubsw/packages/fsl/current/bin/immv
>> H_20090707ML_T1_struc_brain_pve_1
>> H_20090707ML_T1_struc_GM
>> /usr/pubsw/packages/fsl/current/bin/fast -R 0.3 -H 0.1
>> H_20090901RM_T1_struc_brain ;
>>
>> /usr/pubsw/packages/fsl/current/bin/immv
>> H_20090901RM_T1_struc_brain_pve_1
>> H_20090901RM_T1_struc_GM
>> /usr/pubsw/packages/fsl/current/bin/fast -R 0.3 -H 0.1
>> M_20091215AR_T1_struc_brain ;
>>
>> /usr/pubsw/packages/fsl/current/bin/immv
>> M_20091215AR_T1_struc_brain_pve_1
>> M_20091215AR_T1_struc_GM
>> /usr/pubsw/packages/fsl/current/bin/fast -R 0.3 -H 0.1
>> M_20100215FM_T1_struc_brain ;
>>
>> /usr/pubsw/packages/fsl/current/bin/immv
>> M_20100215FM_T1_struc_brain_pve_1
>> M_20100215FM_T1_struc_GM
>>
>> YUMI
>>
>> > Hi Yumi,
>> >
>> > it is likely that the first step of fslvbm2 (fslvbm2a,
>> the automatic
>> > segmentation into GM) has failed, as the error message
>> at the registration
>> > step of the GM image indicates your image is empty.
>> >
>> > What information is in fslvbm2a.e*.1?
>> >
>> > Cheers,
>> > Gwenaelle
>> >
>> >
>> >> De: YUMI MAEDA <[log in to unmask]>
>> >> Objet: [FSL] fslvbm_2_template error file
>> >> À: [log in to unmask]
>> >> Date: Vendredi 11 mars 2011, 20h59
>> >> HI,
>> >>
>> >> I run fslvbm_2_template and I got some error files
>> like
>> >> this.
>> >> what does this mean?
>> >> thank you
>> >> YUMI
>> >>
>> >> fslvbm2b.e22162.1
>> >> WARNING::in calculating COG, total = 0.0
>> >> WARNING::in calculating COG, total = 0.0
>> >> WARNING::in calculating COG, total = 0.0
>> >>
>> >
>> >
>> --------------------------------------------------------------------
>> >
>> > Gwenaëlle Douaud, PhD
>> >
>> > FMRIB Centre, University of Oxford
>> > John Radcliffe Hospital, Headington OX3 9DU
>> Oxford UK
>> >
>> > Tel: +44 (0) 1865 222 523 Fax: +44 (0) 1865 222
>> 717
>> >
>> > www.fmrib.ox.ac.uk/~douaud
>> >
>> >
>> --------------------------------------------------------------------
>> >
>> >
>> >
>> >
>> >
>> >
>>
>>
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