HI,
I run fslvbm_2_template and I got some error files like this.
what does this mean?
thank you
YUMI
fslvbm2b.e22162.1
WARNING::in calculating COG, total = 0.0
WARNING::in calculating COG, total = 0.0
WARNING::in calculating COG, total = 0.0
fslvbm2c
#!/bin/sh
if [ -f ../template_list ] ; then
template_list=`cat ../template_list`
template_list=`$FSLDIR/bin/remove_ext $template_list`
else
template_list=`echo *_struc.* | sed 's/_struc\./\./g'`
template_list=`$FSLDIR/bin/remove_ext $template_list | sort -u`
echo "WARNING - study-specific template will be created from ALL input
data - may not be group-size matched!!!"
fi
for g in $template_list ; do
mergelist="$mergelist ${g}_struc_GM_to_T"
done
$FSLDIR/bin/fslmerge -t template_4D_GM $mergelist
$FSLDIR/bin/fslmaths template_4D_GM -Tmean template_GM
$FSLDIR/bin/fslswapdim template_GM -x y z template_GM_flipped
$FSLDIR/bin/fslmaths template_GM -add template_GM_flipped -div 2
template_GM_init
fslvbm2d
/usr/pubsw/packages/fsl/current/bin/fsl_reg H_20090707ML_T1_struc_GM
template_GM_init H_20090707ML_T1_struc_GM_to_T_init -fnirt
"--config=GM_2_MNI152GM_2mm.cnf"
the rest other 3 subjects is followed after this.
I am testing the script with 4 subjects,
my template_list is this,
H_20090707ML_T1.nii
H_20090908AT_T1.nii
M_20090818MT_T1.nii
M_20090825MS_T1.nii
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