Robert Immormino
Does this service answer you question. It is limited to 10,000 return
results for the statistical analysis so it is possible to ask general
questions
where the statistics are truncated.
http://www.ebi.ac.uk/pdbe-as/pdbestatistics/PDBeStatisticsAtom.jsp
Tom Oldfield
> Hi Cale,
> My advice would be to find someone local with experience in scripting
> possibly in python or perl. This is a tractable problem with a bit of
> scripting and if you aren't already experienced this may be a good
> opportunity to delve into a bit of programing.
> Good Luck,
> -bob
>
> On Tue, Mar 8, 2011 at 7:20 PM, Cale Dakwar<[log in to unmask]> wrote:
>> Thanks for the quick reply. This is a very good resource but not quite what
>> I need. As far as I can tell, this resource is based on a dataset from
>> 10-08-1998 and then only included x-ray crystal structure with better than 2
>> angstrom data. I also can't in this database a mention of the PDB
>> structures in which e.g. the shortest His-His distances have been observed.
>> - C
>>
>> On Tue, Mar 8, 2011 at 6:19 PM, Ed Pozharski<[log in to unmask]> wrote:
>>> On Tue, 2011-03-08 at 17:44 -0500, Cale Dakwar wrote:
>>>> Amongst other things, I want e.g. generate a histogram from this table
>>>> and determine e.g. the shortest HisND1 pair distance observed and the
>>>> structure in which this happens.
>>> For this specific question this can be useful
>>>
>>> http://www.biochem.ucl.ac.uk/bsm/sidechains/index.html
>>>
>>>
>>>
>>> --
>>> "I'd jump in myself, if I weren't so good at whistling."
>>> Julian, King of Lemurs
>>>
>>
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