Hi there,
I am processing our qMT data with TBSS, ie I first register the qMT maps and the bo image to the T1 weighted image using flirt (6 dof), then I invert the transformation matrix from b0-->T1 and apply it to the qMT data in T1 space.
Our qMT data are quite low resolution in the z plane and fairly anisotropic (1.75 x 1.75 x 5 mm3) and maybe as a result the qMT in the MNI-FA space are not as neat as the FA maps with respect to the registration results and I was wondering with how much deviation between participants the TBSS software can deal with. I am happy to upload some images for you to look at, just let me know.
Thanks for your help!
Torsten
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