Hi,
I wanna register the EPI image to the T2 weighted one of mouse brain. I use FLIRT with dof = 6 and the cost is set as default. Before that I did the skull stripping of the T2.
The result is very bad as the image is totally misaligned and the slices at the beginning and the end are cut off partially.
Can anyone provide me some suggestion?
Thanks a lot!
Van L
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