Hi,
It sounds like you do not want to overlay images but instead want to use the
atlas tools in FSLView (which tell you names of regions, percentages, etc.).
See: http://www.fmrib.ox.ac.uk/fsl/fslview/atlas.html
All the best,
Mark
On 24 Feb 2011, at 15:08, Rajagopalan, Venkateswaran wrote:
>
> Dear All,
>
> I did VBM analysis and now I am looking at my results. I used cluster and atlasquery to get coordinates and corresponding regions of the brain. For visualization purposes I tried to overlay Harvard cortical atlas (in FSLview over MNI 2mm brain and my tstat file) so I saw a folder named atlases in my FSL directory and inside this I have a Harvard cortical atlas folder inside of it there are files ending with......thr25-2mm etc like that. I would like to know what these thresholds mean and when I choose one of them I have a colored atlas I am wondering is there a way get the names of different regions of brain pertaining to different colors in the atlas.
>
> Thanks
>
> Venkat
>
>
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