That happens also for me with all hydrogens, regardless if they belongs to a
ligand or protein.
Best solution for me is stripping all hydrogens out of the pdb. Manipulating
the file in coot and readding them and start of the renfinement.
Christian
Am Donnerstag 10 Februar 2011 17:04:18 schrieben Sie:
> When I real space refine my ligand the hydrogens fly away. The ligand pdb
> file and cif file were generated with progdr. I'm using Coot 0.6.2-pre-1.
>
> Kendall
>
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