Hello!
I have some questions concerning to probtrackx tractography. The steps i am carrying out are:
1) Flirt each original data in my sample (after eddy_current_correction and bedpostx) to the standard MNI152_T1_2mm_brain image.
2) Then i create a mask in the Flirted image of each subject.
3) Registration each image to the MNI152_T1_2mm_brain image.
3) After that i run probtrack with this mask and the matrix converter standard2diff.mat
4) The outputs are fdt_paths.nii.gz of each subjetc
(I would be glad if you confirm that this process is correct).
My question is if is it possible to obtain an unque image which contains the % of the paths whose traces match in all the sample and how to get this value.
Thanks for yor attention,
Patricia.
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