Coot does this seamlessly..
Eleanor
SSM superpose A to B
NCS Maps will generate the map around A over B - or vice versa..
Eleanor
On 01/28/2011 06:15 PM, RONG hui Rong wrote:
> Dear All,
>
> I have the problem as follows, but I can not find the corresponding
> solution. Can somebody give me some suggestions?
> Many Thanks,
> Hui Rong
> *****************************************************************************************
> [PyMOL] aligning electron density maps
>
>
> Eksterowicz, John
> Wed, 03 Mar 2004 15:03:43 -0800
>
> I have a pdb and xplor file which contain two units of the same
> protein/inhibitor complex. What I am trying to do is align the two
> proteins to each other so I can compare the subunits. I can accomplish
> this by reading in the pdb file twice and aligning the b unit from the
> second pdb file to the a unit of the first pdb file. I then split
> everything into objects then delete what i don't want. In the end I
> have subunits a and b aligned to each other.
>
> I would like to be able to do the same thing for the electron denisty
> map. Is there a way to align maps?
>
> If I read in a protein and a map, then align the protein to another
> protein, the protein moves, but the map remains in it's original
> location. Can the map coordinates be transformed somehow?
>
> Is it possible to create some association with the protein and the map
> such that when the protein is aligned, the map will follow?
>
> Thanks,
> John
> *****************************************************************************************
>
> On 1/28/11, RONG hui Rong<[log in to unmask]> wrote:
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