You did not specify an output. You need --opd in your command.
Peace,
Matt.
-----Original Message-----
From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On Behalf
Of Madhura Ingalhalikar
Sent: Friday, January 07, 2011 10:37 AM
To: [log in to unmask]
Subject: [FSL] fdt_path missing
Hi,
I am using probtrackx with label from freesurfer as seed. When I run
probtrackx, it only creates probtrackx.log and waytotal.
I dont see fdt.log and fdt_path in the logdir.
What could be the possible problem? I have checked the label and the
transform. It seems correct.
This is my command:
probtrackx -x 063-008.label -m nodif_brain_mask.nii.gz -s
06302010-20100630_DTI_prob_tractography.bedpostX/merged
--seedref=$SUBJECTS_DIR/mri/nifti/brain --xfm=freesurfer2fa.mat
--mesh=$SUBJECTS_DIR/surf/lh.white.asc --mode=seedmask
Let me know,
Madhura
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