Hi,
I've been trying to run fslvbm, and find that some if the images in the 4D template (after the fslvbm_2_template) step are exactly flipped about the X-axis. The brain images going into that step are not flipped, and look good. Which ones are flipped seem to be kind of random, and often not repeatable. I've tried adding the -noshape option to the flirt steps, but that doesn't fix the flipping issue and makes the warping even worse (again randomly on some images). Does anybody have any thoughts or have seen this?
Thanks - Bob Devins
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