Hello TBSS experts,
I posted this question/error message but have gotten no reply so here we go again...
I'm trying to run TBSS on MD but am getting the following error message.
Could someone please tell me what I'm doing wrong?
using pre-chosen registration target: target
upsampling alternative images into standard space
CON_NeoBIG_001_FA
......
......
PAT_NeoBIG_179_FA
merging all upsampled MD_files_renamed images into single 4D image
projecting all_MD_files_renamed onto mean FA skeleton
cat: thresh.txt: No such file or directory
** ERROR (nifti_image_read): failed to find header file for 'all_MD_files_renamed_skeletonised'
** ERROR: nifti_image_open(all_MD_files_renamed_skeletonised): bad header info
Error: failed to open file all_MD_files_renamed_skeletonised
ERROR: Could not open image all_MD_files_renamed_skeletonised
Image Exception : #22 :: Failed to read volume all_MD_files_renamed_skeletonised
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
/usr/local/fsl-4.1.4/bin/tbss_non_FA: line 104: 15986 Aborted (core dumped) ${FSLDIR}/bin/tbss_skeleton -i mean_FA -p $thresh mean_FA_skeleton_mask_dst ${FSLDIR}/data/standard/LowerCingulum_1mm all_FA all_${ALTIM}_skeletonised -a all_$ALTIM
now run stats - for example:
randomise -i all_MD_files_renamed_skeletonised -o tbss_MD_files_renamed -m mean_FA_skeleton_mask -d design.mat -t design.con -n 500 --T2 -V
(after generating design.mat and design.con)
Thank you in advance for your help!
Georgios Alexandrou M.D.
Karolinska Institutet
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