Hi Fernanda -
You would use the standard2example.mat file in the first level
directories - this is where registration is done. Or use the invwarp
function if you've used FNIRT. However, FEATquery automatically
transforms your mask images so you probably don't need to do this (see
the FEATquery webpage).
Best
Eugene
On 3 December 2010 18:40, Fernanda Palhano <[log in to unmask]> wrote:
> Hello,
>
> I want to use Featquery for investigate some results of a high level
> analysis.
> I need to create a mask of a ROI. My question is about how to transform the
> mask to native space.
> Using the follow command,
> flirt -in mask_MNI152_T1_2mm -ref .gfeat/cope1.feat/example_func -applyxfm
> -init ? -out mask_native_space
> which matrix I should use in -init? I can't find a transform matrix like
> standard2example_func.mat in the gfeat
> directory.
>
> Thank you for all your help in advance.
>
> Fernanda
>
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