Hi
You need to run probtrackx from each mask separately, including the targets as "classification targets" (or the --targetmasks option in command line, accompanied with --os2t)
The results that you are looking for will be stored in files named seeds_to_<yourTargetNames>
Cheers,
Saad.
On 1 Nov 2010, at 23:40, shaza zaghlool wrote:
> Hello,
> If I have a group of masks and group of targets and I would like to get a count of the tracks going from each mask to each target in a matrix form, how do I get this information after running probtrackx. Is that what the "output seed to target as text" option does?
> Thanks,
--
Saad Jbabdi
University of Oxford, FMRIB Centre
JR Hospital, Headington, OX3 9DU, UK
(+44)1865-222466 (fax 717)
www.fmrib.ox.ac.uk/~saad
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