Dear Songling,
Does the result of FIRST appear OK in FSLView?
This may simply be an incompatibility with the BrainSuit
visualisation as I am not familiar with it. However, if it
is a problem with FIRST then it should show up in FSLView.
All the best,
Mark
On 1 Oct 2010, at 00:48, Songling Liu wrote:
> Hi Experts,
>
> Recently, when I worked on First, I ran two commands to retrieve a
> Hippocampus, the I load the Hippocampus into BrainSuit with menu
> File->Open->Label Volume, the position of the Hippocampus isn’t
> correct. Please see the attached screenshot.
>
> The command I used are as following, I tried on the example data.
>
> first_flirt structural structural_to_std_sub
>
> run_first –i structural –t structural_to_std_sub.mat –n 20 –o
> structural_first_L_Hippo –m ${FSLDIR}/data/first/models_336__bin/
> L_Hipp_bin.bmv
>
>
> Is anybody met this before?? Or any suggestions?
>
> Thanks & Best Regards
> Songling Liu <brainsuit.jpg>
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