See the "Orientation-related Utilities" section of:
http://www.fmrib.ox.ac.uk/fsl/avwutils/index.html
cheers,
-MH
On Thu, 2010-10-07 at 20:56 +0100, Mike Sugarman wrote:
> Hello,
>
> I have a library of structural scans and am trying to conduct some analyses. However, when I view my scans, in every image viewer I use, whenever I use Orthoview, my sagittal and coronal slices are improperly oriented; they are either rotated 90 or 180 degrees. I am also having problems getting clean skull strips from BET, and I suspect these two issues might be related. Does anybody know of a way to rotate my images so that they are the proper orientation?
>
> Thanks,
> -Mike Sugarman
> Department of Psychology
> Wayne State University
|