Hi,
Your syntax is wrong. All double minus options require
an equals sign and no spaces. So what you need is
--out_res=myresiduals
in order to store the residuals in a file called "myresiduals".
All the best,
Mark
On 30 Sep 2010, at 19:35, Yiou Li wrote:
> Hi Christian,
>
> I used the following command:
>
> fsl_glm -i inputfile.nii.gz -d reg_design -m mask.nii.gz -o
> output_file out_res residual_file
>
> The regression worked, however, I can't find any output of the
> residuals file. I also tried not specifying "residual_file":
>
> fsl_glm -i inputfile.nii.gz -d reg_design -m mask.nii.gz -o
> output_file out_res
>
> Same problem.
>
> Could you please advise what's the correct command format to get the
> residual maps?
>
> Best,
> Leo
>
>
>
> On Tue, Sep 28, 2010 at 7:47 PM, Christian F. Beckmann
> <[log in to unmask]> wrote:
>> try fsl_glm
>> hth
>> Christian
>>
>>
>> On 28 Sep 2010, at 16:01, Yiou Li wrote:
>>
>>> Hi there,
>>>
>>> Is there a FSL command (not GUI as for FEAT) to do simple (least
>>> squares) linear regression on functional MRI data for each voxel
>>> time
>>> series? Given that user will provide the design matrix?
>>>
>>> Best,
>>> Leo
>>>
>>
>
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