Hi Jesper,
Sorry to both you again.
I've used the std2imgcoord command. I inputted an image volume under -img, the standard after -std and the .mat from the FLIRT that I used to coregister the anatomical with the standard after -xfm (i.e. I didn't use an inverse matrix, just the one set up when I ran FLIRT), and left the co-ordinate file blank as I didn't know what this was.
This outputted 3 numbers, although I don't know what they represent and hence don't know if I needed the co-ordinate file for it to work correctly?
Thanks again,
Jo
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