Hi Matt and Francis,
> Okay, I don't know how FNIRT handles an --aff argument, if it
> automatically
> incorporates that into the resulting warp or not. Perhaps Jesper or
> Mark
> knows?
I'm sorry I missed the initial part of this thread. fnirt includes the
initial affine transform into its output (-cout) file. Applywarp knows
this and extracts the affine warp from the header and combines that
with the non-linear warps given by the coefficients.
Hope that answers your question?
Jesper
|