Hi Mark
Thanks a lot.
Regards
Jürgen
On [DATE], "Mark Jenkinson" <[ADDRESS]> wrote:
> Hi,
>
> You can use makerot to make a FLIRT rotation
> matrix (note that you should specify the centre of
> rotation with --cov or -c) and then use FLIRT to
> apply this rotation to an image using the -applyxfm
> and -init options. Also note that you need to
> specify a reference image for the FLIRT call and
> this will determine what the output FOV and
> voxel size are, but will not use any intensity information
> from the image.
>
> All the best,
> Mark
>
>
> On 15 Oct 2010, at 11:45, Jürgen Hänggi wrote:
>
>> Dear FSL experts
>>
>> I would like to rotate a NIFTI image by some degrees.
>>
>> Is it possible to do it with FSL?
>> Do I have to use FLIRT?
>>
>> Thanks in advance
>> Best regards
>> Jürgen
>>
>> ----------------------------------------------------------------------------
>> Jürgen Hänggi, Ph.D.
>> Division Neuropsychology
>> Institute of Psychology
>> University of Zurich
>> Binzmuehlestrasse 14, PO Box 25
>> 8050 Zurich, Switzerland
>> 0041 44 635 73 97 (phone office)
>> 0041 76 445 86 84 (phone mobile)
>> 0041 44 635 74 09 (fax office)
>> BIN 4.D.04 (office room number)
>> j.haenggi[at]psychologie.uzh.ch (email)
>> http://www.psychologie.uzh.ch/neuropsy/ (website)
>> http://www.juergenhaenggi.ch (private website)
>>
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Jürgen Hänggi, Ph.D.
Division Neuropsychology
Institute of Psychology
University of Zurich
Binzmuehlestrasse 14, PO Box 25
8050 Zurich, Switzerland
0041 44 635 73 97 (phone office)
0041 76 445 86 84 (phone mobile)
0041 44 635 74 09 (fax office)
BIN 4.D.04 (office room number)
j.haenggi[at]psychologie.uzh.ch (email)
http://www.psychologie.uzh.ch/neuropsy/ (website)
http://www.juergenhaenggi.ch (private website)
This e-mail (and any attachment/s) contains confidential and/or privileged
information. If you are not the intended recipient (or have received this
e-mail in error) please notify the sender immediately and destroy this
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