Dear Ed,
On 9/15/10 2:47 PM, Ed Pozharski wrote:
> On Wed, 2010-09-15 at 16:26 -0400, Phil Jeffrey wrote:
>> So the riding hydrogen model is imperfect. At least with
>> phenix.refine
>> you can measure it, unlike the default behavior of REFMAC. (But you
>> can
>> tell it to write hydrogens out, I believe).
>>
> My impression is that default behavior of phenix.refine is the same - I
> had to change parameters to include hydrogens in the output.
No, if your input file contains H atoms, the output file will contain
them too (in phenix.refine). You don't have to change any parameters for
this.
Pavel.
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