Fri. Sept 3rd 2010
EBI
Try ProFit
ttp://www.bioinf.org.uk/software/profit/
as you can give the atom names you want to fit.
Miri
On Fri, 3 Sep 2010, Rex Palmer wrote:
> This is not really protein crystallography but we are trying to model build a ligand into a protein binding site. A
> similar ligand is already in place and we want to replace this by initially superimposing a phenyl ring which is
> common to both ligands. We understand that such superpositioning can be done with eg Quanta but do not have access to
> this program. Does anyone know of a downloadable program that we could use instead?
>
> Rex Palmer
> Birkbeck College, London
>
>
|