It's still a bit hard to tell. Could you give more details, and/or
upload the mask and background image to
http://www.fmrib.ox.ac.uk/cgi-bin/upload.cgi
and send me the id..
Eugene
On 13 September 2010 21:09, Woodman, Sandra <[log in to unmask]> wrote:
> Hi Eugene,
>
> When I load both the mask and the image, the mask is transparent even when we
> change the colors. Why can't we see the mask?
>
> Thank you!
>
> -Sandra
>
> Sandra Woodman
> Mood and Motor Control Laboratory
> Athinoula Martinos Center for Biomedical Imaging
> Massachusetts General Hospital
> 120 6th St.
> Charlestown, MA 02129
> Tel: 617-643-6245
> Fax: 617-726-1351
> Email: [log in to unmask]
>
>
>
> -----Original Message-----
> From: FSL - FMRIB's Software Library on behalf of Eugene Duff
> Sent: Mon 9/13/2010 3:58 PM
> To: [log in to unmask]
> Subject: Re: [FSL] Making a mask
>
> Hi Sandra -
>
> I'm not exactly sure where the difficulty is, but once you've saved
> the mask as an image file, you can then load it as an overlay to any
> like-sized image.
>
> Does that help?
>
> Eugene
>
> --
>
>
> On 13 September 2010 20:35, Woodman, Sandra <[log in to unmask]> wrote:
>> Hello!
>>
>> I'm working on creating a mask and was wondering if anyone knew how to view
> the
>> mask once it had been created?
>>
>> I used the steps in the following web page to create the mask:
>>
>> http://fsl.fmrib.ox.ac.uk/fsl/fslview/masking.html
>>
>> Now I want to make sure it is actually masking the correct area.
>>
>> Thanks for you help!
>>
>> -Sandra
>>
>> Sandra Woodman
>> Mood and Motor Control Laboratory
>> Athinoula Martinos Center for Biomedical Imaging
>> Massachusetts General Hospital
>> 120 6th St.
>> Charlestown, MA 02129
>> Tel: 617-643-6245
>> Fax: 617-726-1351
>> Email: [log in to unmask]
>>
>>
>>
>> -----Original Message-----
>> From: FSL - FMRIB's Software Library on behalf of Aditya Kumar Kasinadhuni
>> Sent: Mon 9/13/2010 2:34 PM
>> To: [log in to unmask]
>> Subject: [FSL] Thresholding in Post-stats of FEAT
>>
>> Hi all,
>>
>> I was wondering if there was some documentation that I can go through
> regarding
>> the various thresholding options enlisted in the post-stats section. In
>> particular I would like to know the difference between voxel and cluster
>> thresholding, and also I understand it makes cluster indices based on the
>> z-statistic threshold but how does FSL calculate this?
>>
>> Thank you.
>>
>>
>>
>> The information in this e-mail is intended only for the person to whom it is
>> addressed. If you believe this e-mail was sent to you in error and the e-mail
>> contains patient information, please contact the Partners Compliance HelpLine
> at
>> http://www.partners.org/complianceline . If the e-mail was sent to you in
> error
>> but does not contain patient information, please contact the sender and
> properly
>> dispose of the e-mail.
>>
>>
>
>
|