Hello,
Before conducting preprocessing for the entire fMRI dataset, I preprocessed one subject's data as a testing run and I wanted to make sure that what I did was correct (I am unsure of 'segmentation' and 'normalization').
Here is what I did...
After slice timing and realignment (estimate&reslice), I ran 'segment' to which I added the ORIGINAL T1 image with all of the default options kept. <-- IS THIS RIGHT?
After 'segment', I ran 1) normalise (estimate&write) - for functional images: I put as a source image the output T1 image from segmentation (m~.img)- bias-corrected image. <-- IS THIS CORRECT?
2) normalise (write) - for structural image: I chose as my parameter file the output from the previous normalizaion which looks like m~.sn.mat) and for images to write, I chose again the bias-corrected structual image from segmentation (m~.img) <--- ARE THESE TWO CHOICES CORRECT?
Thank you for much for your help in advance!
Claire
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