Aman,
FSl works with NIFTI formats (type 'fslchfiletype' and see the output for what formats are allowed).
Usually we convert DICOM to NIFTI using MRIcron's dcm2nii utility (search and install MRIcron, dcm2nii comes with it). So, first, you will have to map your data from Bruker to NIFTI somehow.
Silviu
-----FSL - FMRIB's Software Library <[log in to unmask]> wrote: -----
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From: aman gupta <[log in to unmask]>
Sent by: FSL - FMRIB's Software Library <[log in to unmask]>
Date: 08/04/2010 01:41PM
Subject: [FSL] FSL not accepting image format from Bruker
Hi,
I am trying to run tractography on the DTI images obtained from Bruker DRX Avance imaging system using FSL, but i am having trouble with the image formats. FSL is not accepting the image format from Bruker. Does anybody else have faced this issue before? I would appreciate it if anyone could provide some input on that?
Thanks,Aman Gupta
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