Hi Mark,
thanks a lot for your reply. I need to clarify one more thing:
when doing the BET manually, I always put the coordinates for centre
of initial brain surface sphere
that I set up for that particular individual in fslview. Do you think
adding something like "find centre of gravity for each particular
brain" when running the BET script would help? Do you happen to have
some experience with that?
Thanks a lot,
Klara
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