Hello All,
I'm using the easythresh_conj3 script (posted earlier this year) that is a modification to the easythresh_conj script (posted by Tom Nichols in Feb of 2008) that allows for a 3 group conjunction. I have gotten the script to run and give me an output that looks reasonable but I only get a rendered conjunction nifti file and a rendered minimum zstat conjunction file.
It appears from the code that I should also get a non-rendered thresholded zstat file and a cluster list so I can actually access the statistical values in the image. Any suggestions on how I can get those would be appreciated. Unfortunately I an running a conjunction between analyses in separate feat directories so I was not able to input the smoothness. Following is the syntax I used. I've also noticed that the output I get does not change when I change the threshold which is also worrisome. Any insights would be greatly appreciated!
./easythresh_conj3.sh /Volumes/sprite/fmri/Liz_Imitation/subjects/group_n=19_fixed/cope4.gfeat/cope1.feat/stats/zstat1 /Volumes/sprite/fmri/Liz_Imitation/subjects/group_n=19_fixed/cope5.gfeat/cope1.feat/stats/zstat1 /Volumes/sprite/fmri/Liz_Imitation/subjects/group_n=19_fixed/cope6.gfeat/cope1.feat/stats/zstat1 2.3 /Volumes/sprite/fmri/Liz_Imitation/subjects/group_n=19_fixed/cope4.gfeat/cope1.feat/example_func conjunction_analysis
|