On 7 Aug 2010, at 12:28, Magnus Kjærgaard wrote:
> Yes, I use nmrPipe and no I do not un-transpose my data. I guess I could
> do this though if that is the problem.
Hi Magnus, I think this might be the cause then. I'll speak with Tim and Wayne about alternatives, but I think asking the user to either explicitly declare (or confirm) dimension ordering when opening a spectrum would make things unnecessarily complicated and enforcing a 1H = acquistion = x rule would be too limiting.
I would append your scripts with " | nmrPipe -fn TP " so that
| nmrPipe -fn TP \
| nmrPipe -fn SP -off 0.5 -end 1.00 -pow 1 -c 0.5 \
| nmrPipe -fn ZF -auto
| nmrPipe -fn FT -auto \
| nmrPipe -fn PS -p0 0.00 -p1 0.00 -di -verb \
-ov -out test.ft2
becomes
| nmrPipe -fn TP \
| nmrPipe -fn SP -off 0.5 -end 1.00 -pow 1 -c 0.5 \
| nmrPipe -fn ZF -auto
| nmrPipe -fn FT -auto \
| nmrPipe -fn PS -p0 0.00 -p1 0.00 -di -verb \
| nmrPipe -fn TP \
-ov -out test.ft2
to undo the previous transposition, or use the
xyz2pipe -in <data in> <dimension X>
<do regular pipe>
xyz2pipe -out <data out> <dimension X>
which I use for high dimensional data processing (so I don't loose track of my dimensions).
Having said all this though, I must admit that I find Azara much more intuitive and flexible, but then I would say that ;-)
Hoping that this helps...
Dan
Daniel O'Donovan
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