Strangely it has now decided to cooperate and is calling the python2.5
in the ccpn distribution. I'm not too sure why it had a tantrum but it
seems to have gotten over it now!
Crisis averted.
Simon
On 08/05/2010 02:38 PM, Wayne Boucher wrote:
> Ah, your computer is being obstinate. Sometimes computers will insist
> on using stuff in /usr/local even if you've told it to look
> elsewhere. So you are running the Python executable we provided but
> unfortunately your computer insists on picking up the Python libraries
> from that 2.6 distribution instead of ours, and I guess in turn that
> means it's getting confused about Tcl/Tk. I once had this problem
> with a Tcl/Tk in /usr/local on some computer and the only way I
> managed to get around it was to get rid of it, but that is not
> generally an option.
>
> Dan says to mention that in the next release (hopefully tomorrow)
> there will be an option to do this in a way which will hopefully get
> around this issue. I'll let him explain in due course.
>
> Wayne
>
> On Thu, 5 Aug 2010, S.P. Skinner wrote:
>
>> But now it's also saying
>>
>> Traceback (most recent call last):
>> File
>> "/afs/gorlaeus.net/lic/metprot/software/ccpnmr//ccpnmr2.1/python/ccpnmr/analysis/AnalysisGui.py",
>> line 53, in <module>
>> import Tkinter
>> File "/usr/local/lib/python2.6/Tkinter.py", line 39, in <module>
>> import _tkinter # If this fails your Python may not be configured
>> for Tk
>> ImportError: No module named _tkinter
>>
>> So it seems to be using my python2.6, not the python2.5 compiled with
>> the software.
>>
>>
>> On 08/05/2010 12:47 PM, Wayne Boucher wrote:
>>> Hello,
>>>
>>> I tried installing the 32 bit on one of our machines that is 64 bit
>>> (the only 32 bit machine we have immediate access to was the one
>>> that produced the release so would not be a fair test) and it ran
>>> ok. So this is puzzling. One thing we could check (although I'm
>>> not sure it will tell us much) is what the python2.5/bin/python
>>> thinks it is using. So at the operating system prompt do (assuming
>>> you are using csh/tcsh/similar):
>>>
>>>> setenv LD_LIBRARY_PATH
>>> "/afs/gorlaeus.net/lic/metprot/software/ccpnmr/ccpnmr2.1.3.1/ccpnmr/tcl8.5/lib:/afs/gorlaeus.net/lic/metprot/software/ccpnmr/ccpnmr2.1.3.1/ccpnmr/tk8.5/lib"
>>>
>>> and then
>>>
>>>> ldd
>>> /afs/gorlaeus.net/lic/metprot/software/ccpnmr/ccpnmr2.1.3.1/ccpnmr/python2.5/bin/python
>>>
>>> to see if it says anything useful. (It should list the libraries it
>>> is using.) It might have a line:
>>>
>>> libtcl8.5.so => not found
>>>
>>> but it would be interesting to know all what it says and in
>>> particular if there is any other tcl library being picked up by
>>> mistake.
>>>
>>> Wayne
>>>
>>> On Thu, 5 Aug 2010, S.P. Skinner wrote:
>>>
>>>> Hi Wayne
>>>>
>>>> I'm on a 32-bit machine and I have installed the 32-bit version. I
>>>> have attached the analysis 2.1 script and it all seems in order to me.
>>>>
>>>> Regards
>>>>
>>>> Simon
>>>>
>>>> On 08/05/2010 12:13 PM, Wayne Boucher wrote:
>>>>> Hello,
>>>>>
>>>>> I wonder if the configRelease.py script failed. If you look at
>>>>> (for example)
>>>>> /afs/gorlaeus.net/lic/metprot/software/ccpnmr/ccpnmr2.1.3.1/ccpnmr/bin/analysis
>>>>> does it have
>>>>> /afs/gorlaeus.net/lic/metprot/software/ccpnmr/ccpnmr2.1.3.1/ccpnmr/tcl8.5/lib
>>>>> mentioned in LD_LIBRARY_PATH? Also check that libtcl8.5.so exists
>>>>> in that directory.
>>>>>
>>>>> Alternatively, perhaps this is a 32-bit / 64-bit problem. (I
>>>>> assume you are on Linux.)
>>>>>
>>>>> Wayne
>>>>>
>>>>> On Thu, 5 Aug 2010, S.P. Skinner wrote:
>>>>>
>>>>>> Hi Guys
>>>>>>
>>>>>> Been attempting to install analysis 2.1.3_1 but I get the error
>>>>>> "/afs/gorlaeus.net/lic/metprot/software/ccpnmr/ccpnmr2.1.3.1/ccpnmr/python2.5/bin/python2.5:
>>>>>> error while loading shared libraries: libtcl8.5.so: cannot open
>>>>>> shared object file: No such file or directory" after having ran
>>>>>> the configRelease.py script.
>>>>>>
>>>>>> How can I solve this
>>>>>>
>>>>>> Regards
>>>>>>
>>>>>> Simon
>>>>>>
>>>>>> --
>>>>>> Simon P Skinner
>>>>>> Protein Chemistry Group
>>>>>> Leiden Institute of Chemistry, Universiteit Leiden
>>>>>> Phone: +31 71 527 6089 / Fax: +31 71 527 4349
>>>>>> E-mail : [log in to unmask]
>>>>>>
>>>>
>>>> --
>>>> Simon P Skinner
>>>> Protein Chemistry Group
>>>> Leiden Institute of Chemistry, Universiteit Leiden
>>>> Phone: +31 71 527 6089 / Fax: +31 71 527 4349
>>>> E-mail : [log in to unmask]
>>>>
>>>>
>>
>> --
>> Simon P Skinner
>> Protein Chemistry Group
>> Leiden Institute of Chemistry, Universiteit Leiden
>> Phone: +31 71 527 6089 / Fax: +31 71 527 4349
>> E-mail : [log in to unmask]
>>
--
Simon P Skinner
Protein Chemistry Group
Leiden Institute of Chemistry, Universiteit Leiden
Phone: +31 71 527 6089 / Fax: +31 71 527 4349
E-mail : [log in to unmask]
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