I also got same error with some of PDB files I got today after refinement. I checked some of the files of same project it works there.
I don't know the difference why its happening. I was trying to fix molprobity flags and refine them.
Looking for suggestions
Thanks
Yogi
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From: CCP4 bulletin board [[log in to unmask]] On Behalf Of Julie Neubauer [[log in to unmask]]
Sent: Sunday, August 29, 2010 4:57 PM
To: [log in to unmask]
Subject: [ccp4bb] error running reduce/probe in WinCoot
Hello,
I'm trying to use the 'probe clashes' function in WinCoot. However, each time I try I get the following error message:
Found 4580 hydrogens <0 hets>
Standardized 6012 hydrogens <0 hets>
Added 344 hydrogens <0 hets>
Removed 0 hydrogens <0 hets>
Adjusted 123 groups(s)
If you publish work which uses reduce, please cite:
Word, et al. (1999) J. Mol. Biol. 285, 1735-1747.
For more information see http://kinemage.biochem.duke.edu
BL WARNING:: reduce didn't run ok, so stop here!
run_generic_script (probe, 0)
I am aware that someone else had this problem and it was suggested that he solve it by changing which set of lines were commented out in the code. I have tried that, but found no difference when trying to run probe clashes afterward.
Does anyone have any other suggestions?
Thanks.
Julie
PCB, Duke University
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