Thank you for the much-needed laugh this morning.
On 08/10/2010 03:09 AM, Stephen Smith wrote:
> Hi - it is very very naughty to have spaces in directory or file names!!
> Cheers, Steve.
>
>
> On 9 Aug 2010, at 20:31, aman gupta wrote:
>
>> Hi
>>
>> I converted the image files to the analyze format using MRICRO as per
>> your suggestion but FSL is still not able to process them (However,
>> FSL View opens the images perfectly)! It gives me an error when i
>> try to upload the files , please see a screenshot of the error
>> attached, i am not able to figure out what the error means.
>>
>> Thanks,
>> Aman
>>
>> On Wed, Aug 4, 2010 at 3:42 PM, David Gutman <[log in to unmask]
>> <mailto:[log in to unmask]>> wrote:
>>
>> In order to do anything with the bruker 2dseq files you need to use
>> MRICRO (not MRICRON)
>>
>> and use the File-->Open used header information (RAW)
>>
>> Then you need to give it the X,Y and Z dimensions (basically
>> theMATRIX
>> which is something like 128x128 or whatever) and Z = number of slices
>>
>> and most likely.. also click the "Data 16-bit" and little:Endian
>> button (and make it Intel not Sun)...
>>
>>
>> Once you do that... you can "save" it as an analyze file so that FSL
>> can play with it.... just email me offline if you get super stuck...
>>
>>
>>
>>
>> <fsl_bruker_error.tiff>
>
>
> ---------------------------------------------------------------------------
> Stephen M. Smith, Professor of Biomedical Engineering
> Associate Director, Oxford University FMRIB Centre
>
> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
> +44 (0) 1865 222726 (fax 222717)
> [log in to unmask] <mailto:[log in to unmask]>
> http://www.fmrib.ox.ac.uk/~steve <http://www.fmrib.ox.ac.uk/%7Esteve>
> ---------------------------------------------------------------------------
>
>
>
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