Hello,
If you upload an image file that produces this problem ( and the corresponding command line call ) to:
http://www.fmrib.ox.ac.uk/cgi-bin/upload.cgi
and let me know the 6-digit reference number, I will investigate what's going wrong.
Many Regards
Matthew
> I've verified that the same problem occurs with 4.1.6, but other than
> that, I haven't got anything to go on.
>
> RAH
>
>
> On 7 July 2010 18:04, Rolf Heckemann <[log in to unmask]> wrote:
>> I am still running into this trouble when I run fast (output
>> appended). I've tried the FSL 4.1.5 binary download as well as a
>> version compiled from current sources. Occasionally, it works when I
>> on the command line, but when I queue a script for cluster execution,
>> it always aborts after reading the input image. Could this be an
>> incompatibility with the kernel? It is a bit dated (2.6.18 in a RHEL5
>> installation). Cluster admins advise to check the environment, but the
>> FSL initialization is identical between the situation where it works
>> and where it doesn't. Does "std::logic_error" in the error message
>> indicate a C library problem? What other information might be relevant
>> for solving this problem? Any hint appreciated.
>>
>> Thanks
>>
>> Rolf Heckemann
>>
>> -- job log excerpt --
>> Starting Single Image Segmentation
>> T1-weighted image
>> Imagesize : 192 x 192 x 160
>> Pixelsize : 1.24982 x 1.24668 x 1.19789
>>
>> terminate called after throwing an instance of 'std::logic_error'
>> what(): basic_string::_S_construct NULL not valid
>> /sps/cermep/soundray/adni/scripts/pipeline.sh: line 48: 19184 Aborted
>> fast -v -N -o fast mricvpre
>>
>> -- log excerpt end --
>>
>
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