Hi
We have a problem with registrating our functional data to the MNI standard space.
Our functional data, and the anatomical image (T1 FLAIR) we are using are both partial brain volumes (the posterior parts of the brain are missing) taken in the coronal plane. On the registration tab we are using the T1 Flair image as our main structural image and the MNI 152 as the standard space.
For the registration to the main structural we are using 15 degree search and 3DOF.
For the registration to the standard space we are using non-linear transformation with 15 degree search and 7 DOF. We left the warp resolution as 10mm which is the default.
This hasn't produced very good registration, especially between the functional and standard space. Is there anything anyone can suggest that we could do when we rerun the registration process to make it work better? I can post an example of the registration log tomorrow if that would help.
Thanks
Rob
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