By the way, if you are trying to get some structures aligned by
accessing ssm via coot scripting, it may be more straightforward just to
use superpose from ccp4 directly (that is what coot does, afaik).
<sarcasm on>
http://xkcd.com/763/
<sarcasm off>
Cheers,
Ed.
On Thu, 2010-07-08 at 17:09 -0400, Ian Stokes-Rees wrote:
> > (coot-real-exit 0)
>
> Thanks. That did it. Now my next question is whether the mailing
> list is the right place to ask about segfaults on SSM superpose. For
> certain structures I get:
>
> superposing...
> *** secondary structure does not match.
> /programs/l/coot/0.6.2-pre-1-r2969-x86_64/bin/coot: line 247: 10799
> Segmentation fault $coot_real $@
> (coot-crash-catcher.scm:10808): Gtk-WARNING **: cannot open display:
>
> So: 1. it looks like there may be a bug which causes the seg fault;
> and (less importantly) 2. it looks like the crash catcher doesn't
> account for the possibility of being in "--no-graphics" mode.
>
> Is there any way I can avoid this seg fault and have coot continue, do
> I have an old version of coot (I don't think so), is something mis-
> configured, or do I just have to live with this until there is a bug
> fix in the future?
>
> Thanks,
>
> Ian
--
Coot verendus est
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