Thanks for the tips, so far. I should specify: I normalized these
and did the analysis in SPM8. Hopefully, I don't have to go back to
SPM5.
D
----------------------------
Desmond J. Oathes, Ph.D.
Stanford Psychiatry Department
email: [log in to unmask]
url: http://www.stanford.edu/~oathes/
On Tue, Jun 29, 2010 at 10:52 AM, Jonathan Peelle <[log in to unmask]> wrote:
> Hi Desmond
>
>> I have an image file from AAL in MNI space that I'd like to extract
>> for particular conditions in native space from each of my individual
>> subjects. I see some discussion many years ago on a deformation
>> toolbox in SPM but nothing recent. Maybe there is a new method that
>> I'm missing in my search.
>>
>> Could someone give me some tips? A sample job file would be much appreciated.
>
> If you've normalized using the "segment" button, you should have two
> files in the directory of your structural image:
>
> 1) *seg_sn.mat - warps from subject space to template space
> 2) *seg_inv_sn.mat - warps from template space to subject space
>
> So if you have an image in MNI space (e.g., from the AAL atlas), and
> have normalized your subject to MNI space, just apply the
> *seg_inv_sn.mat transformation to that file, which should give you the
> image in the space of that subject.
>
> Hope this helps! Of course, there may be more elegant approaches out there...
>
> Jonathan
>
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