Hi Desmond
> I have an image file from AAL in MNI space that I'd like to extract
> for particular conditions in native space from each of my individual
> subjects. I see some discussion many years ago on a deformation
> toolbox in SPM but nothing recent. Maybe there is a new method that
> I'm missing in my search.
>
> Could someone give me some tips? A sample job file would be much appreciated.
If you've normalized using the "segment" button, you should have two
files in the directory of your structural image:
1) *seg_sn.mat - warps from subject space to template space
2) *seg_inv_sn.mat - warps from template space to subject space
So if you have an image in MNI space (e.g., from the AAL atlas), and
have normalized your subject to MNI space, just apply the
*seg_inv_sn.mat transformation to that file, which should give you the
image in the space of that subject.
Hope this helps! Of course, there may be more elegant approaches out there...
Jonathan
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