Reply-To: | | [log in to unmask][log in to unmask], 8 Jun 2010 22:04:48 +0200572_us-ascii Hi Sean,
do the ligand and the Thr belong to the same chain, and did you check that the distance between the bonding atoms is not beyond coot's cut-off?
Tim
On Tue, Jun 08, 2010 at 11:16:03AM -0700, Sean Gay wrote: > I have used JLigand v 0.2.1 to create a link between a Thr residues and > a covalent adduct. The adduct refines well and shows up as a covalent > bond in PyMOL. However, when I'm in Coot there is no bond present > between the Thr OG1 and the ligand. I've loaded the Jligand link.lib > file [...][log in to unmask] |