Perhaps you are exceeding the maximum allowable time on that queue.
Peace,
Matt.
-----Original Message-----
From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On Behalf
Of Liz Selgrade
Sent: Tuesday, June 29, 2010 10:04 AM
To: [log in to unmask]
Subject: [FSL] tbss_x error during subjectwise reassignment
Hi Saad and Group,
I'm trying to run tbss_x on a group of 72 subjects and am having problems.
I previously ran it successfully on a group with 44 subjects.
Everything seems to run fine until subjectwise reassignment. These are the
error messages I'm getting from that point on:
/home/ess25/tbss_x: line 213: 7338 Killed
$FSLDIR/bin/swap_subjectwise -m mean_FA_skeleton_mask -r .veclist.txt -f
.scalist.txt -b subjectwise_realigned -v
merging final results
F1
** ERROR (nifti_image_read): failed to find header file for
'subjectwise_realigned_voxelwise_realigned_????_scalars1.*'
** ERROR:
nifti_image_open(subjectwise_realigned_voxelwise_realigned_????_scalars1.*):
bad header info
Error: failed to open file
subjectwise_realigned_voxelwise_realigned_????_scalars1.*
Cannot open volume subjectwise_realigned_voxelwise_realigned_????_scalars1.*
for reading!
F2
** ERROR (nifti_image_read): failed to find header file for
'subjectwise_realigned_voxelwise_realigned_????_scalars2.*'
** ERROR:
nifti_image_open(subjectwise_realigned_voxelwise_realigned_????_scalars2.*):
bad header info
Error: failed to open file
subjectwise_realigned_voxelwise_realigned_????_scalars2.*
Cannot open volume subjectwise_realigned_voxelwise_realigned_????_scalars2.*
for reading
I thought that it might be a problem with memory, but I get the same errors
when trying it with two different SGEs. (When it fails on the second SGE, I
get "31283 Killed" instead of "7338 Killed.") It also seems unlikely to me
that it's a problem with the inputs, as I've checked them individually. Any
thoughts of what might be going on?
Thanks!
Liz Selgrade
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