The order in processing I am using is:
(1) Realignment
(2) Slice time correction
(3) Coregistration...
If I follow what I said below:
Coregister:
ref.img: T1 structural image
sou.img: Mean fMRI
other images: all the realigned fMRI volumes
Do I choose in coregistration under "other images" the realigned images and NOT the slice time corrected images?
Thanks,
Ed
-----Original Message-----
From: Modestino, Edward J *HS
Sent: Friday, May 28, 2010 10:03 AM
To: 'Jonathan Peelle'
Cc: [log in to unmask]
Subject: RE: [SPM] Coregistration/activity outside occipital lobe
Jonathan,
I am only interested in single subject results in this case, although we do have another run for this subject. I have normalized the data. I overlaid the activation onto the neuroantomical image and it was outside the brain. In the glass brain, it was inside the brain. So, I think I will try following the advice of a previous post.
Coregister:
ref.img: T1 structural image
sou.img: Mean fMRI
other images: all the realigned fMRI volumes
Ed
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