> The order in processing I am using is:
> (1) Realignment
> (2) Slice time correction
> (3) Coregistration...
>
> If I follow what I said below:
> Coregister:
> ref.img: T1 structural image
> sou.img: Mean fMRI
> other images: all the realigned fMRI volumes
>
> Do I choose in coregistration under "other images" the realigned images and NOT the slice time corrected images?
You want to choose whatever images you'll be doing the stats on, so in
this case, the slice-time corrected images. (It wouldn't hurt to
select the realigned images, in addition....).
Jonathan
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