Hi,
Why do you say this?
The mm coordinates for either template are the same.
To convince yourself, pick a point in the brain on one of the
templates (1mm or 2mm),
write down the mm coordinates, open the other template and then enter
these
coordinates in the mm coordinate boxes. You'll find yourself at the
same anatomical
location! So hence it doesn't matter.
All the best,
Mark
On 17 May 2010, at 15:41, Estephan Moana wrote:
> Sorry to re-post this but I am trying to write a script to retrieve
> cluster coordinates from higher-level analysis and input them into
> atlasquery, with no avail thus far. If anybody has something already
> written, I would welcome any suggestions.
>
> I have some questions on its usage:
> 1) It seems that when I enter coordinates, atlasquery read them from
> the MNI152_T1_2mm template. Is there a way to change it to the
> MNI152_T1_1mm, for example?
> 2) I tried entering the MNI 1mm template using the argument "-m",
> but the output was quite different (printed below). Can somebody
> shed a light on the output using the "-m" argument?
> atlasquery -a "MNI Structural Atlas" -m /usr/local/fsl/data/standard/
> MNI152_T1_1mm_brain.nii.gz -c 36,15,-1
> Caudate:0.642736
> Cerebellum:8.74935
> Frontal Lobe:13.2472
> Insula:0.663146
> Occipital Lobe:6.46823
> Parietal Lobe:9.35302
> Putamen:0.754439
> Temporal Lobe:8.15127
> Thalamus:0.91447
>
> Thank you.
>
> Estephan Moana, DDS, MS
> Graduate Student
> Oral Biology PhD Program - Neurobiology track
> School of Dentistry, UNC- Chapel Hill
>
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