>I’m trying to prepare an alignment figure of 2 proteins that highlight conserved and similar residues and probably secondary structures; I will greatly >appreciate it if anybody can recommend a software that I can use. Thanks, Mohd
For those who like TeX, TeXshade is incredibly powerful, and produces beautiful alignment figures.
http://www.ctan.org/tex-archive/help/Catalogue/entries/texshade.html
James
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Dr. James W. Murray
David Phillips Research Fellow
Division on Molecular Biosciences
Imperial College, LONDON
Tel: +44 (0)20 759 48895
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From: CCP4 bulletin board [[log in to unmask]] On Behalf Of Victor Alves [[log in to unmask]]
Sent: Sunday, May 23, 2010 12:41 PM
To: [log in to unmask]
Subject: Re: [ccp4bb] Alignment software
Hi Mohd
You can also check: ALINE (An Extensible WYSIWYG Protein Sequence Alignment Editor for Publication Quality Figures)
http://crystal.bcs.uwa.edu.au/px/charlie/software/aline/
It’s quite nice and has a lot of potential, although unfortunately it seems that development of the software as stopped :-(
Cheers
Victor Alves
From: CCP4 bulletin board [mailto:[log in to unmask]] On Behalf Of Salameh, Mohd A., Ph.D.
Sent: sexta-feira, 21 de Maio de 2010 16:11
To: [log in to unmask]
Subject: [ccp4bb] Alignment software
Dear All,
I’m trying to prepare an alignment figure of 2 proteins that highlight conserved and similar residues and probably secondary structures; I will greatly appreciate it if anybody can recommend a software that I can use. Thanks, Mohd
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