Hi,
I solved the problem.
I didn't do the following step properly:
"Copy your L2 images into this new directory, making sure that they are named EXACTLY the same as the original FA images were"
The original name was for example: alon_dtifit_FA. As the L2 images were not FA images, I adjust the end of the name, alon_dtifit_L2. But like the instruction says, it has to be exactly the same name. This means, that I have to name my L2 images as follow: alon_dtifit_FA.
cheers,
Elena
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